RESOURCES
UK-Biobank Single Variant Association Analysis Results
Using SAIGE, we have analyzed ~1,400 UKBiobank Phecode binary phenotypes (400,000 White British samples) on 28 million imputed variants. All analysis summary statistics are available from the following link.
Note: we have moved summary statistics from Dropbox to FTP site.
Acknowledgement: The analysis was done with collaboration with Dr. Willer and Dr. Abecasis groups. The Pheweb was created by Dr. Abecasis group.
UK-Biobank Gene-Based
Rare Variant Association Results
Using SAIGE-GENE, we have carried out gene-based rare variant test (MAF < 0.01) for 53 UKBiobank quantitative phenotypes (400,000 White British samples). Missense and stop-gain variants were used in the analysis. The association test p-value are available from the following link.
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Summary statistics
UK-Biobank GxE analysis for 80 Phenotype x Environment combinations
Using SPAGE, we have carried out GxE analysis for 80 selected phenotype x environment combinations. The association test p-value are available from the following link.
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Summary statistics
UK-Biobank WES Binary Phenome Analysis
Using robust SKAT-O approach for binary phenotypes, we analyzed UK-Biobank WES data for 791 binary phenotypes.
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PheWEB-like visual server for summary statistics
UK-Biobank Gene-Set analysis
Using Gauss, we carried out gene-set association analysis using UK-Biobank SAIGE results
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PheWEB-like visual server for summary statistics
UK-Biobank Survival Analysis for 13 Phenotypes
Using SPACox, we have carried out GWAS survival analysis for 13 selected phenotypes. The association test p-value are available from the following link.
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Summary statistics